Critical fixes:
- gen-index.sh: emit services, config, optional_system_deps from bakery.toml;
parse product list from registry TOML instead of hardcoded array; fail loudly
when bakery.toml is missing (was silently producing empty metadata in prod)
- install.rs: download service units and example configs from dl server at
install time (were never fetched); check systemctl exit codes (were swallowed);
save state before file cleanup in remove_package (was inconsistent on error)
- doctor.rs: rewrite dep detection to use `pacman -Q` as primary (no more
dependency on `which` or pkg-config name mismatches); add optional_system_deps
support returning (missing, warnings) — warnings print but never block install
- get.sh: fix GitHub fallback URL (was 404 for both latest and versioned
releases); add SHA-256 checksum verification using published .sha256 file
High priority fixes:
- bakery doctor <unknown-pkg>: exit non-zero (was silently passing)
- bakery update: add --all flag (documented in README but missing from CLI);
add doctor gate before update (was bypassing dep check)
- bread_deps: now resolved recursively with cycle detection (was ignored)
- manifest.rs: add artifact_urls() helper and optional_system_deps field
- state.rs: atomic save via tmp+rename; cmd_info shows optional_system_deps
Tests: 17 new unit tests across doctor, download, install, state modules;
scripts/test-gen-index.sh fixture test for full pipeline
- breadbox: was 'cloud sync daemon + file browser'; it's actually a GTK4
fuzzy app launcher; breadbox-sync resolves icons, not cloud data
- breadcrumbs: was 'network information CLI'; it's a profile-aware Wi-Fi
state machine with Tailscale integration and a watch daemon
- breadpad: was 'scratchpad / quick-note app'; call out AI classification,
reminders, recurrence, and the breadman viewer
- system deps: add gtk4-layer-shell for breadbox and breadpad (both use
layer-shell windows); drop spurious 'dbus' from breadbox
